This is probably not the solution you are looking for but it can still possibly help you.
For crafting all upgrades you have to find nearly all resources in the game and you have to scan 54/58 objects to obtain the "blueprints" for the upgrades. To find all these things can be sometimes difficulty.
I have created a video which show you from start to the end of the game all scans, all resources (enough to craft all upgrades. At the end I have 25 Organic, 29 Metal, 55 Fiber and 77 Alien resources more as needed) and all missable achievements.
If you follow the video along your playthrough you will obtain all achievements. On Youtube in the description and pinned comment you can find the entire really long detailed timeline with timestamps for scans / resources and achievements.
If you have any question, ask :)