You only need one of each so there is no need to upgrade the ones you don't use. Don't worry about the 11th plasmid as you will get it as part of the story line. Here is a list:
1) Cyclone Trap - Gatherer's Garden
2) Decoy - Gatherer's Garden
3) Electro Bolt - Gatherer's Garden (story related)
4) Hypnotize - Limbo Room in Pauper's Drop
5) Incinerate! - Gatherer's Garden
6) Insect Swarm- Gatherer's Garden
7) Scout Gatherer's - Garden
8) Security Command- Found it Siren Alley/ Gatherer's Garden
9) Telekinesis - Jet Postal station in the Atlantic Express.
10) Winter Blast Gatherer's Garden in Ryan Amusements.
11) STORY RELATED - you will get it on the last level